RNA-Pareto: interactive analysis of Pareto-optimal RNA sequence-structure alignments
نویسندگان
چکیده
منابع مشابه
RNA-Pareto: interactive analysis of Pareto-optimal RNA sequence-structure alignments
Incorporating secondary structure information into the alignment process improves the quality of RNA sequence alignments. Instead of using fixed weighting parameters, sequence and structure components can be treated as different objectives and optimized simultaneously. The result is not a single, but a Pareto-set of equally optimal solutions, which all represent different possible weighting par...
متن کاملComputing Pareto Optimal Committees
Selecting a set of alternatives based on the preferences of agents is an important problem in committee selection and beyond. Among the various criteria put forth for desirability of a committee, Pareto optimality is a minimal and important requirement. As asking agents to specify their preferences over exponentially many subsets of alternatives is practically infeasible, we assume that each ag...
متن کاملRNA-RNA interaction prediction based on multiple sequence alignments
MOTIVATION Many computerized methods for RNA-RNA interaction structure prediction have been developed. Recently, O(N(6)) time and O(N(4)) space dynamic programming algorithms have become available that compute the partition function of RNA-RNA interaction complexes. However, few of these methods incorporate the knowledge concerning related sequences, thus relevant evolutionary information is of...
متن کاملInteractive Pareto Optimal with Advantage and Application in Distribution Planning
An interactive pareto optimal with advantage (IPOA) approach for bi-objective programming is proposed and applied on capacitor placement and sizing problem. Two main contradictory concerned which including cost and quality properties are considered as bi-objective programming formulation. The IPOA approach can provide a valuable trade-off pareto-optimal solution by following the intention of de...
متن کاملBirds Shed RNA-Viruses According to the Pareto Principle
A major challenge in disease ecology is to understand the role of individual variation of infection load on disease transmission dynamics and how this influences the evolution of resistance or tolerance mechanisms. Such information will improve our capacity to understand, predict, and mitigate pathogen-associated disease in all organisms. In many host-pathogen systems, particularly macroparasit...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformatics
سال: 2013
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btt536